Information on the 3D reconstruction PC: Difference between revisions

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m (Removed link to Equipment Status under Resources since the status can be viewed directly by users in FBS, per Tiffany 4/15/24 sg)
 
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PC configuration
{{InstrumentInfobox|
Processor: Intel Core i9-10900X (10-Core) (Boost Up to 4.5 GHz) Motherboard: MSI X299 PRO (Intel X299 Chipset) (Up to 4x PCI-E De-
|InstrumentName = Microscopy High Performance PC
vices)
|HeaderColor = #F5A81C
System Memory: 128GB DDR4 3200MHz Digital Storm Performance Power Supply: 850W Digital Storm Performance Series (Modular) (80
|ImageOne = MicroscopePC.jpg
Plus Gold)
|InstrumentType = [[Equipment_List#Microscopy|Microscopy]]
Storage Set 1: 1x SSD M.2 (2TB Samsung 970 EVO PLUS) (NVM Ex-
|RoomLocation = B2 242 Keck
press)
|LabPhone = 626-395-1548
Storage Set 2: 1x Storage (2TB Seagate / Toshiba / Hitachi)
|PrimaryStaff = [[Annalena Wolff]]
Internet Access: High Speed Network Port (Supports High-Speed Ca-
|StaffEmail = awolff@caltech.edu
ble / DSL / Network Connections)
|StaffPhone = 626-395-5994
Graphics Card(s): 1x NVIDIA RTX A4000 16GB (Professional Worksta-
|Manufacturer = Digital Storm
tion) (Outputs: 4 x DisplayPort 1.4a)
|Model = ORION NanoFab
Sound Card: Integrated Motherboard Audio
|Techniques = 3D reconstruction, Offline processing of microscope data, Simulations for Microscopy
ExtremeCooling: H20:Stage2:DigitalStormVortexLiquidCPUCooler
|RequestTraining = awolff@caltech.edu
(Dual Fan) (Fully Sealed + No Maintenance)
|Slack = #high-performance-pc
CableManagement: PremiumCableManagement(StrategicallyRouted
and Organized for Airflow)
Chassis Fans: Standard Factory Chassis Fans
BoostProcessor: Stage1:OverclockCPU-Upto4.5GHzviaIntelTurbo
Boost Max Technology 3.0
Windows OS: Microsoft Windows 10 Professional (64-Bit)
Virus Protection: Windows Defender Antivirus (Built-in to Windows) SurgeShield: APC1500VAUninterruptedPowerandSurgeConditioner
- BX1500M - (NOTE: Ships VIA Ground ONLY)


}}
== Description ==
The Microscopy High Performance PC


Available Programs Microscopy Programs
===== Available Microscopy Programs =====
Digital Micrograph
* Digital Micrograph
Fiji / ImageJ shortcut is located on the desktop Dragonfly is located on the desktop WinCasino V2
* Fiji / ImageJ shortcut is located on the desktop
WinCasino V3
* Dragonfly is located on the desktop
SRIM
* WinCasino V2
pyPENELOPE
* WinCasino V3
DesignPrograms
* SRIM
Rhino7 RhinoGrasshopper LycheeSlicer DeScribe
* pyPENELOPE
Other Simulation software
 
Comsol Multiphysics 5.5
===== Other Available Programs =====
* Rhino7
* RhinoGrasshopper
* LycheeSlicer
* DeScribe
* Comsol Multiphysics 5.5
 
===== Applications =====
* Monte Carlo Simulations of electron- and ion solid interactions
* 3D reconstruction of microscopy data (FIB/SEM, TEM)
* Image post processing
* TEM data analysis
===== PC Configuration =====
* Processor: Intel Core i9-10900X (10-Core) (Boost Up to 4.5 GHz)
* Motherboard: MSI X299 PRO (Intel X299 Chipset) (Up to 4x PCI-E Devices)
* System Memory: 128GB DDR4 3200MHz Digital Storm Performance
* Power Supply: 850W Digital Storm Performance Series (Modular) (80Plus Gold)
* Storage Set 1: 1x SSD M.2 (2TB Samsung 970 EVO PLUS) (NVM Express)
* Storage Set 2: 1x Storage (2TB Seagate / Toshiba / Hitachi)
* Internet Access: High Speed Network Port (Supports High-Speed Cable/ DSL / Network Connections)
* Graphics Card(s): 1x NVIDIA RTX A4000 16GB (Professional Workstation)(Outputs: 4 x DisplayPort 1.4a)
* Sound Card: Integrated Motherboard Audio
* Extreme Cooling: H20: Stage 2: Digital Storm Vortex Liquid CPU Cooler(Dual Fan) (Fully Sealed + No Maintenance)
* Cable Management: Premium Cable Management (Strategically Routedand Organized for Airflow)
* Chassis Fans: Standard Factory Chassis Fans
* Boost Processor: Stage 1: Overclock CPU - Up to 4.5GHz via Intel Turbo
* Boost Max Technology 3.0
* Windows OS: Microsoft Windows 10 Professional (64-Bit)
* Virus Protection: Windows Defender Antivirus (Built-in to Windows)
* Surge Shield: APC 1500VA Uninterrupted Power and
 
== Resources ==
===== SOPs =====
* [https://caltech.box.com/s/6az94atn4i3dnd64oafyzet6t5c750k3 SOP Microscopy High Performance PC]
* [https://caltech.box.com/s/35frs7vq8ve3al73d8uyt4rq8w22ae7e SOP 3D Reconstruction via ORS Dragonfly]

Latest revision as of 23:26, 15 April 2024

Microscopy High Performance PC
MicroscopePC.jpg
Instrument Type Microscopy
Techniques 3D reconstruction, Offline processing of microscope data, Simulations for Microscopy
Staff Manager Annalena Wolff
Staff Email awolff@caltech.edu
Staff Phone 626-395-5994
Reserve time on FBS
Request training via FBS User Dashboard
Lab Location B2 242 Keck
Lab Phone 626-395-1548
Manufacturer Digital Storm
Model ORION NanoFab
File:Noimage.jpg

Description

The Microscopy High Performance PC

Available Microscopy Programs
  • Digital Micrograph
  • Fiji / ImageJ shortcut is located on the desktop
  • Dragonfly is located on the desktop
  • WinCasino V2
  • WinCasino V3
  • SRIM
  • pyPENELOPE
Other Available Programs
  • Rhino7
  • RhinoGrasshopper
  • LycheeSlicer
  • DeScribe
  • Comsol Multiphysics 5.5
Applications
  • Monte Carlo Simulations of electron- and ion solid interactions
  • 3D reconstruction of microscopy data (FIB/SEM, TEM)
  • Image post processing
  • TEM data analysis
PC Configuration
  • Processor: Intel Core i9-10900X (10-Core) (Boost Up to 4.5 GHz)
  • Motherboard: MSI X299 PRO (Intel X299 Chipset) (Up to 4x PCI-E Devices)
  • System Memory: 128GB DDR4 3200MHz Digital Storm Performance
  • Power Supply: 850W Digital Storm Performance Series (Modular) (80Plus Gold)
  • Storage Set 1: 1x SSD M.2 (2TB Samsung 970 EVO PLUS) (NVM Express)
  • Storage Set 2: 1x Storage (2TB Seagate / Toshiba / Hitachi)
  • Internet Access: High Speed Network Port (Supports High-Speed Cable/ DSL / Network Connections)
  • Graphics Card(s): 1x NVIDIA RTX A4000 16GB (Professional Workstation)(Outputs: 4 x DisplayPort 1.4a)
  • Sound Card: Integrated Motherboard Audio
  • Extreme Cooling: H20: Stage 2: Digital Storm Vortex Liquid CPU Cooler(Dual Fan) (Fully Sealed + No Maintenance)
  • Cable Management: Premium Cable Management (Strategically Routedand Organized for Airflow)
  • Chassis Fans: Standard Factory Chassis Fans
  • Boost Processor: Stage 1: Overclock CPU - Up to 4.5GHz via Intel Turbo
  • Boost Max Technology 3.0
  • Windows OS: Microsoft Windows 10 Professional (64-Bit)
  • Virus Protection: Windows Defender Antivirus (Built-in to Windows)
  • Surge Shield: APC 1500VA Uninterrupted Power and

Resources

SOPs
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